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GmshReader: deprecate method that can't be used correctly

Jö Fahlke requested to merge fs1698-deprecate-gridfactoryless-data-read into master

GmshReader::read(fileName, boundarySegmentToPhysicalEntity, elementToPhysicalEntity, verbose, bool)

can't be used correctly, as the vector of elementToPhysicalEntity is indexed by the insertion index. But there is no way to find out the insertion index, as you need a grid factory to do that. And there are better alternatives, either mthods that don't take data vectors as arguments, or ones that also pass along a gridfactory.

Addresses: flyspray/FS#1698 (closed)

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