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2.0 Refactor

Santiago Ospina De Los Ríos requested to merge refactor/v2.0 into master

This refactor includes the following features:

  • Allows different parser backends: muparser, exprtk, and SymEngine.
  • Adds constants, (lambda) function, and random fields definitions within the parsers.
  • Re-implementation of local operator: huge performance improvements.
  • Adds tensor cross-diffusion, storage, velocity, and external boundary terms.
  • Allows for volume coupling between compartments.
  • Splits the subdomain and the compartment concepts. Now compartments with no entities or no components are perfectly possible.
  • Uses new basis functions from dune-pdelab that allows native usage of multi-domains (branch: features/dune-assembler/main).
  • Extends compatibility of tiff images to different bit sizes.
  • Adds monitoring (info, warning and error) of variables with new generic reduce operators.
  • Switches logging from dune-logging to spdlog.
  • Designed to be thread-safe, although is not entirely yet implemented.
  • Adds tracing capabilities with perfetto.
  • Allows Selection of between direct and sparse solvers, and matrix free operators.
  • Allows to print matrix layout in a SVG file.
  • Unifies the executable for different dimensions and different degrees of freedom layouts.
  • Improves command line interface.

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